Protein Info for HP15_2958 in Marinobacter adhaerens HP15

Annotation: extracellular solute-binding protein family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01547: SBP_bac_1" amino acids 56 to 309 (254 residues), 89.9 bits, see alignment E=1.6e-29

Best Hits

Swiss-Prot: 47% identical to SP39_BRUSU: Probable sugar-binding periplasmic protein (BRA0693) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 67% identity to vsp:VS_0875)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PN89 at UniProt or InterPro

Protein Sequence (416 amino acids)

>HP15_2958 extracellular solute-binding protein family 1 (Marinobacter adhaerens HP15)
MTMTTFKKTLTAAAVSAALLPAQALQAGEVEVLHWWTAGGEARAAVALKEMMEDQGHTWK
DFAVAGGGGEAAMTVLKTRAVSGNPPAAAQIKGLDIREWAKLGFLTSLDDVAEANNWGQL
IPPVIADVMQYEDSYVAVPVNVHRVNWLWANPETLNKVGVGVPKTLDEFYQAAEKLKAAG
ITPLAHGGQPWQDATVFEAVALAVMGPDDFASAFVEHDMDVINSAQMEEVFAEFAKVMSY
VDDNAAGRDWNTATGMVIRGEAAMQIMGDWAKGEFTAAGLTPGEDYVCAAAPGTGGQFTF
NVDSFAMFSLSDEDNTKAQKDLARTIMEPEFQAVFNKAKGSIPVRTDFDTCAQASMDTFK
SSAEDGGLVPSFAHGLATTSYVQGQIFDVVTNFVNSDNKDPARATDQLAAAIQAAL