Protein Info for HP15_2948 in Marinobacter adhaerens HP15

Annotation: oxidoreductase FAD-binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 PF00970: FAD_binding_6" amino acids 54 to 141 (88 residues), 37.2 bits, see alignment E=4.7e-13 PF00175: NAD_binding_1" amino acids 156 to 254 (99 residues), 50.8 bits, see alignment E=3.7e-17 PF00111: Fer2" amino acids 293 to 346 (54 residues), 27.1 bits, see alignment 4.9e-10

Best Hits

KEGG orthology group: None (inferred from 73% identity to maq:Maqu_3069)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PN79 at UniProt or InterPro

Protein Sequence (369 amino acids)

>HP15_2948 oxidoreductase FAD-binding domain protein (Marinobacter adhaerens HP15)
MTMLAKQTQQKALHWLGRQLFNRDDPEAFFDPLLERINPMWVQEYTPARVEQILSETGDT
KTLVLKPARRWSGFRAGQHVNICVEVDGVRRNRTFSLSSSPLLWQEQGLVTLTIKRLPGG
LVTNWLHDHLQTGAVIGLGEAFGDFLIPEPARPVLFIAGGSGITPVLSQLETMAAQDYRA
PVTLLYFVRTRDDVIAREKLLALKARYSALTLNIIATNESREPRYLRGQDLDAVPGIKAR
QVYLCGPKGLMDLAQGLLSERGFADADIHSTFFSVPSANLGNETLGGEVQFEGSQMVVGS
EGDATLLEIAEAAGLTPRHGCRMGICHQCSCRKTTGTVINRLTGQTSGPGEETVQLCISV
PRGPVSLDL