Protein Info for PGA1_c30410 in Phaeobacter inhibens DSM 17395

Annotation: HTH-type transcriptional regulator, AsnC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF13404: HTH_AsnC-type" amino acids 3 to 44 (42 residues), 68.1 bits, see alignment E=1.4e-22 PF13412: HTH_24" amino acids 3 to 50 (48 residues), 74.6 bits, see alignment E=1.1e-24 PF01047: MarR" amino acids 6 to 50 (45 residues), 26.3 bits, see alignment E=1.7e-09 PF08279: HTH_11" amino acids 8 to 48 (41 residues), 24.2 bits, see alignment E=7.3e-09 PF09339: HTH_IclR" amino acids 9 to 50 (42 residues), 24.8 bits, see alignment E=4.5e-09 PF01037: AsnC_trans_reg" amino acids 69 to 143 (75 residues), 80.2 bits, see alignment E=2.6e-26

Best Hits

Swiss-Prot: 40% identical to LRP_KLEPN: Leucine-responsive regulatory protein (lrp) from Klebsiella pneumoniae

KEGG orthology group: None (inferred from 90% identity to sit:TM1040_3629)

Predicted SEED Role

"Transcriptional regulator, AsnC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EQT8 at UniProt or InterPro

Protein Sequence (152 amino acids)

>PGA1_c30410 HTH-type transcriptional regulator, AsnC family (Phaeobacter inhibens DSM 17395)
MSLDHTDRRILQVLQKQGRISNAELSEQVNLSASACHRRVQRLETDGYIRNYVALLDARK
MNLPATVFVEITLQSQADELLDAFEKAVARIPDVLECHLMAGTADYILKVVAENTDDFAR
IHRQHLTRLPGVAQMQSSFALRTVFKTTALPV