Protein Info for Psest_3046 in Pseudomonas stutzeri RCH2

Annotation: ATPases involved in chromosome partitioning

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF01883: FeS_assembly_P" amino acids 5 to 76 (72 residues), 61.2 bits, see alignment E=3.3e-20 PF10609: ParA" amino acids 96 to 341 (246 residues), 337.6 bits, see alignment E=1.5e-104 PF13614: AAA_31" amino acids 99 to 137 (39 residues), 37.4 bits, see alignment 8.9e-13 PF09140: MipZ" amino acids 100 to 222 (123 residues), 35.6 bits, see alignment E=2.3e-12 PF01656: CbiA" amino acids 101 to 269 (169 residues), 53.8 bits, see alignment E=6.6e-18 PF02374: ArsA_ATPase" amino acids 103 to 136 (34 residues), 22.3 bits, see alignment 2.4e-08

Best Hits

KEGG orthology group: K03593, ATP-binding protein involved in chromosome partitioning (inferred from 96% identity to psa:PST_1263)

Predicted SEED Role

"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQG2 at UniProt or InterPro

Protein Sequence (364 amino acids)

>Psest_3046 ATPases involved in chromosome partitioning (Pseudomonas stutzeri RCH2)
MSVTREAVETVLRQYTDPHLNQDPVSAGCVRSIDVQGDRVSVQLELGYAAGLFRSGWAQL
LAMAIEQLEGVSRADVQVDCVVRAHKAQDQVPALANVKNIIAVASGKGGVGKSTTAANLA
LALAREGARVGVLDADIYGPSQGIMFGIAEGTRPEIRDGKAFIPLEAHGVQVMSMAFLSD
DKTPMVWRGPMVSGALLQLITQTAWNDLDYLVVDMPPGTGDIQLTLAQKVPVAGAVIVTT
PQDLALLDAKKGVEMFRKVNIPVLGVVENMAIHICSNCGHAEHLFGEGGGEKLAAQYNVD
LLASLPLSMAIRSQADAGKPTVIADPESQIAMIYQEVARTVGARIAQSGQIIAQSMPKIV
ISED