Protein Info for Psest_3034 in Pseudomonas stutzeri RCH2

Annotation: DnaJ-class molecular chaperone with C-terminal Zn finger domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 PF12339: DNAJ_related" amino acids 10 to 133 (124 residues), 149.5 bits, see alignment E=2.8e-48

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_1275)

Predicted SEED Role

"DnaJ-class molecular chaperone"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GP26 at UniProt or InterPro

Protein Sequence (197 amino acids)

>Psest_3034 DnaJ-class molecular chaperone with C-terminal Zn finger domain (Pseudomonas stutzeri RCH2)
MDDLSPALDLPDHLLILLQDQPEGCSEYALIQQLKRRHSTHIPNLPLTDKLVLFRTHFLV
FNALYLLRDRLWAEASGHLQISPLHIQLLPYTSASAGLSEQDALREYYLDLSNLKDTDED
DVERLLASFWTRMQGSDEKRAALELFELDRSTQPLTLDVIKRRYRQLVGLHHPDRGGSTQ
RLQSINLAMEILQRYYR