Protein Info for HP15_2879 in Marinobacter adhaerens HP15

Annotation: urea ABC transporter, permease protein UrtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 39 to 62 (24 residues), see Phobius details amino acids 65 to 91 (27 residues), see Phobius details amino acids 104 to 115 (12 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 294 to 318 (25 residues), see Phobius details amino acids 330 to 351 (22 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 39 to 353 (315 residues), 444.2 bits, see alignment E=1.8e-137 PF02653: BPD_transp_2" amino acids 46 to 342 (297 residues), 133.8 bits, see alignment E=3.2e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 92% identity to maq:Maqu_2999)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PMD1 at UniProt or InterPro

Protein Sequence (374 amino acids)

>HP15_2879 urea ABC transporter, permease protein UrtC (Marinobacter adhaerens HP15)
MWLTRPLQERSTQIFLGVLFSAVVLVTFLHLFMPQDSALHVSAFTVTLLGKYLCYALLAV
AVDLVWGYLGILSLGHGAFFALGGYAMGMYLMRQIGDRGVYGDPILPDFMVFLNWQELPW
FWHGFDMAWFAFIMVLLAPGLLALVFGFLAFRSRVTGVYLSIITQALTFALMLAFFRNEM
GFGGNNGLTDFKDILGFNLRTDATRLGLFIATGIALAIGYVICRGIVISKLGRVSVACRD
AEARTRFLGYRVERVQLFVFVVSAMLAGVAGALYVPQVGIINPSEFSPLFSIEIVVWVAL
GGRATLYGAVIGAILVNYAKTVFTGIMPDAWLFALGGLFVLVTVFLPKGIAGLLQKRRKA
REDDDTPTAQEATV