Protein Info for Psest_2974 in Pseudomonas stutzeri RCH2

Annotation: Predicted glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF07317: PilZN" amino acids 17 to 121 (105 residues), 70.6 bits, see alignment E=1e-23 PF07238: PilZ" amino acids 124 to 233 (110 residues), 42.9 bits, see alignment E=5.4e-15

Best Hits

Swiss-Prot: 51% identical to YCGR_PSEPK: Flagellar brake protein YcgR (ycgR) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 74% identity to psa:PST_1382)

Predicted SEED Role

"FIG00955605: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNX7 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Psest_2974 Predicted glycosyltransferase (Pseudomonas stutzeri RCH2)
MSSLLLDEEGPQPPKLLTAPLEIYANLRPLIDNNTPLTLRFNERSQRYQTFLVEMNRETG
WIALDELIPNDGERFLLQGEAFHIEGFYEGARVSWANDEKVHVGEIDGARCYWIPTPAEL
TYHQRRNAYRAQLKEPAVAAQLGGAALRKALEGRLLDISATGCKLSIKGNQQASLQTGQV
YELSARLSIGTIQAAVELRHLVIDEKLDASLCGLRFHRLSGLTQRHIERLVYQLQRDARR
ETAESPFG