Protein Info for PGA1_c29520 in Phaeobacter inhibens DSM 17395

Annotation: beta-1,6-N-acetylglucosaminyltransferase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 PF02485: Branch" amino acids 4 to 246 (243 residues), 77.1 bits, see alignment E=1.6e-25 PF19350: DUF5928" amino acids 270 to 525 (256 residues), 420 bits, see alignment E=3.4e-130

Best Hits

KEGG orthology group: None (inferred from 70% identity to sil:SPO3319)

Predicted SEED Role

"EpsK domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EQL4 at UniProt or InterPro

Protein Sequence (525 amino acids)

>PGA1_c29520 beta-1,6-N-acetylglucosaminyltransferase-like protein (Phaeobacter inhibens DSM 17395)
MAKIAYVLLCHKDPEAIIQQAERLTAAGDYMAIHFDGRSPASDYQQIRTALKDNPNICFA
RKRVKCGWGEWSLVQATLYALESAVATFRRATHFYMVSGDCMAIKTAEYAHQLLDSRDCD
YIESFDFFESNWIKTGMKEDRLIYRHVFNERKNKRLFDLSHSLQKRLGLTRALPEDMQIQ
IGSQWWCLRRRTVEWILSFLTERRDVLRFFRTTWIPDETFFQTLVRHLVSTKEIESRTLT
LLMFSDYGMPVQFYNDHYDMLMGQDFLFARKISPEAQELKSRLGALYAEQDVEFQISNEG
RNLYGFLTKRGRNGLRFAPRFWETESTLGRNRELLIISCKKWHVAKRLIDRLREVSNVPA
LAYLFDEEGTDMPDLGGIEATLWKRTRHRRALVRMLFDYYETDRLVICLDPSALELMQDF
CADRAVTRILQIECSLSDDYLTGHAERIGLAGQQTASAALERLLPTIRNDIQHESDRIRD
VGFDHHSLIRESDSNEQIAEQLMPFLALDHDAALTLARTEHLFSD