Protein Info for PGA1_c29180 in Phaeobacter inhibens DSM 17395

Annotation: peroxidase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 10 to 184 (175 residues), 215.9 bits, see alignment E=3.7e-68 PF02627: CMD" amino acids 52 to 99 (48 residues), 36 bits, see alignment E=2.9e-13 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 66 to 111 (46 residues), 41.2 bits, see alignment E=8.8e-15

Best Hits

KEGG orthology group: None (inferred from 86% identity to sil:SPO3757)

Predicted SEED Role

"Mlr4105 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F2H0 at UniProt or InterPro

Protein Sequence (191 amino acids)

>PGA1_c29180 peroxidase-like protein (Phaeobacter inhibens DSM 17395)
MTRDTDAPTALDLPMVDPLPPETQKYFDICQEKLGMVPNVLRANAFDIDKLNAFTGMYND
LMLADSGLSKLEREMIAVVVSSINSCFYCLAAHGAAVRQLSGDPKLGEMLVMNYRVAPLE
PRQRAMLDFAAKATKASAEIEEADRQILRGHGFSDRDIWDIANVTGFFNMSNRVASATGM
VPNDAYHAQHR