Protein Info for Psest_2903 in Pseudomonas stutzeri RCH2

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 PF14657: Arm-DNA-bind_4" amino acids 21 to 41 (21 residues), 23.5 bits, see alignment (E = 3.5e-09) PF00589: Phage_integrase" amino acids 157 to 307 (151 residues), 67 bits, see alignment E=1.8e-22

Best Hits

Swiss-Prot: 61% identical to INTG_BPPF1: Putative integrase from Pseudomonas phage Pf1

KEGG orthology group: None (inferred from 58% identity to pmk:MDS_1097)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNM8 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Psest_2903 Site-specific recombinase XerD (Pseudomonas stutzeri RCH2)
MITKGPTGWDVDFWLDRTAGIRKRKRGFRTKSEAERWVVDMRREYSHRGRDPGERLADLV
QVWYELHGATLKDQKRYGRTLAIVDALGNPIASSFTALDFSRYRAERLKSCTPATVNHEH
RYLKAVFNELIRLGVWHEANPVAKLRQLRVDETELTYLTLDECRLVLDECAASTNSHTLP
VAKLCLATGARWDEAESITRNQLLNGQVRFARTKNGRVRTIPVPDDLVKLMLERGYPGSG
RLFSSCRSAFRKAYERTGLHTPGQLTHILRHTFASHYMMQGGNILTLQRILGHGDIKMTM
RYSHLAPDHFATVLSHSPLALLGQKDQQDAAN