Protein Info for PGA1_c28790 in Phaeobacter inhibens DSM 17395

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details amino acids 88 to 128 (41 residues), see Phobius details amino acids 143 to 167 (25 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 293 to 315 (23 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details PF03773: ArsP_1" amino acids 40 to 340 (301 residues), 133.1 bits, see alignment E=6e-43

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 71% identity to sit:TM1040_0158)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DTX6 at UniProt or InterPro

Protein Sequence (342 amino acids)

>PGA1_c28790 Predicted permeases (Phaeobacter inhibens DSM 17395)
MAELTQNLRPVTLIARGIKTPWALCVAILLAVAVLDPGNLAEVIRFAGAALLHTGRYILF
AVLLLSYLKATGAEVMVVRAFEGREVRMIFLAAVFGGLAPFCSCEVIPFIAGLLALGAPL
SAVMAFWLASPLIDPPTLLITAGALGWPFAIAKAVAAVALGLFGGFAIKALRGAGAFASP
LRQAPTSGCCGCGAPKAEAPVWAFWREPARRSQFRQEFISNGLFLVKWLTLAYVLEALLV
SYVPADLIATLVGGEGLLPIATAALVGMPAYLNSYVAPPLLAGLMDQGMSAGAAMAFMVA
GAVSSIPAMAAVWSLVKPQVFATYLALGITGAILSGILFQMV