Protein Info for PGA1_c02930 in Phaeobacter inhibens DSM 17395
Annotation: OmpA domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 64% identity to sit:TM1040_3081)Predicted SEED Role
"OmpA domain protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7DLK1 at UniProt or InterPro
Protein Sequence (636 amino acids)
>PGA1_c02930 OmpA domain-containing protein (Phaeobacter inhibens DSM 17395) MRLSSLLISGLTFVAAAALSLVVAGFAVTGIEAGSETAVRRALDKVGYTWAEVTADGLRV ILNGTAPDEATRFGVISLVGGVVDAARVIDEMQITPSEGIAPPRFSAEILRNDSGISIIG LIPRVTDRETVITRLNTIAGADQVADLLETANYTAPRGWMAAMDYALDALSLLPRSKISV EAEEVSITAISDSVDAKEQIEKRLTRMAPAGLRLSLDIAAPRPVITPFTLRYSLDDAGGR FDACSAESELSRDRILRAATKAGFDGKADCVIGMGVPSPNWARAAELGIASLSELGGGSV TLANADMTLVAAEGTAPALFDHVVGELESALPQVFALHAVLPEPETEDGNGPPEFTATLS PEGQVQLRGRISDEALRQISSSYAQARFGSQNVYSATRVVEDLPADWPVRVLAGLEALSH LQRGAVSVTPDSLSLSGMSHREDAPSEIAKLLSAKLGDAESYELNVTYEAPPEPADKPMS PELCEAELAAVQTVSKITFEPGSATVAAGSRDTLDQIADILARCDGVRLEIQGHTDSQGR EEMNQTLSQSRAQSVLNELRGRRLVTSSFTAKGYGESTPIASNDTEDGREANRRIEFRLI RPANDAASETTLDEAATAPEGTSETPSDSEQETSGQ