Protein Info for Psest_2858 in Pseudomonas stutzeri RCH2

Annotation: Predicted integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 50 to 73 (24 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details PF05425: CopD" amino acids 48 to 150 (103 residues), 65.9 bits, see alignment E=1.9e-22

Best Hits

KEGG orthology group: None (inferred from 92% identity to psa:PST_1522)

Predicted SEED Role

"Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNI2 at UniProt or InterPro

Protein Sequence (154 amino acids)

>Psest_2858 Predicted integral membrane protein (Pseudomonas stutzeri RCH2)
MTPFALLYALHVLAATVWVGGMFFAWMVLRPAAVAMLQAPERLKLWADVFRRFFVWVWVT
VLVLPVSGIGMWHMRFGALESAPRYVHIMTGLYLVMLALFLRIQLLQLPTLKRAVAGEQW
PEGGAVLGQIRRLVGINLVLGLLVIALASARPLF