Protein Info for PGA1_c28280 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 876 PF13476: AAA_23" amino acids 5 to 156 (152 residues), 36.6 bits, see alignment E=3.8e-13

Best Hits

Predicted SEED Role

"DNA double-strand break repair Rad50 ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E3Y4 at UniProt or InterPro

Protein Sequence (876 amino acids)

>PGA1_c28280 hypothetical protein (Phaeobacter inhibens DSM 17395)
MKLTSIRLTNVRRFVDPVEITGIGPGLNLLSAPNEQGKSTIFDALHALFFKDAKSWDKEV
RALAPHAGGDPEVEVELTHQGSHFRIAKSFTKSAGKGTARIWREGTLLHQADAAEAWLRD
LIAPPKDGPVGMLWLRQGLTDFADAKDTLEARRDLMSSLSGEVEAVTGGQKMERLRRRLR
SDLDRMVTSRGARKGGPLAEVEARVAALSERRDALTGQVADLRQLLDQRQLLRREQAELA
APEETAARQSRLRHAETALAAAERHREQCEQARRALDLTVLQRDGQAARIETQTARLADH
ARAATALMQAAERRDGAADQAAEAAQQLKQAEATAAQARDSVARARKSVAAALHAQAAEQ
AQLRRTELGERLAQFDARQTELAKDRQQAGQGVDADALAQLEDLAQAVTLAQHARAASAA
ALSVRYLPGRTATLRLNGENFEEGDEIALPDGGELEVPGLATVTLHPARSDAAGALSEAE
TALATALGQLDFETLAQARAAHQARLAATARLKEGEATQRALAPEGREALVSAIAALPGG
ADPQQEPEITATCDPLPDRTTLEAALAEAEAVQTRAEANLAKARTEEGAVQQSAHGALAE
AKAAEADLDRATQALGETEIATTELAALRAEMPALEQSVTDACAEDARLTAAAPDLEQAR
AACQRARSVVETAQSRLQDLARDLAVLDARISAHASHAVEEELAEVTDQLAVAEARQKAL
HFEVATLRRLDQALEAAQAGAQAQYLGPLMAELTPLLRRLWPEAQVQVDADSVLPSQLAR
GAAEEQLTQLSGGTQEQLALMVRLAFARLLAKSGRGIPVILDDALVYTDDARIEALFDAL
TLQANDLQILVFSCRQKSFRDLGGTSLAIRPVQAIA