Protein Info for Psest_2834 in Pseudomonas stutzeri RCH2

Annotation: outer membrane protein assembly complex, YaeT protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 23 to 783 (761 residues), 873.1 bits, see alignment E=8.8e-267 PF07244: POTRA" amino acids 92 to 171 (80 residues), 53.3 bits, see alignment E=7.7e-18 amino acids 176 to 262 (87 residues), 67 bits, see alignment E=4.1e-22 amino acids 265 to 343 (79 residues), 62.9 bits, see alignment E=7.4e-21 amino acids 347 to 419 (73 residues), 61 bits, see alignment E=2.9e-20 PF01103: Omp85" amino acids 447 to 783 (337 residues), 330 bits, see alignment E=4.1e-102

Best Hits

Swiss-Prot: 33% identical to BAMA_NEIMB: Outer membrane protein assembly factor BamA (bamA) from Neisseria meningitidis serogroup B (strain MC58)

KEGG orthology group: K07277, outer membrane protein (inferred from 98% identity to psa:PST_1545)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPT7 at UniProt or InterPro

Protein Sequence (783 amino acids)

>Psest_2834 outer membrane protein assembly complex, YaeT protein (Pseudomonas stutzeri RCH2)
MKRLLLPAVISALMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGEAADDTRLVD
ATRALFRTGFFQDIQLGREGDVLVISVVERPSISGIEIEGNKAIKTEDLLSGLQQSGLAE
GEIFQRATLEGVRNELQRQYVAQGRYSATIETEVVAQPRNRVALKIKINEGSVAAIKHVN
IVGNSVFADEDLVDLFELKTTNWLSFFRNDDKYAREKLSGDLERLRSYYLDRGYINMDIT
STQVSITPDKKHVYVTVNIDEGERYTVRDVKLSGDLKVPQEEIEALLLAKEGQVFSRKVM
TTTSELITRRLGNEGYTFANVNGVPEAHDEDNTVSITFVVDPGKRAYVNRINFRGNTKTE
DEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQIDVNYSVEEQ
PSGSIMASIGFAQNAGLILGGSISQNNFLGTGNRVSLGLTRSEYQSRYNFGFVDPYWTED
GVSLGYNAFYRTTDYDELDYDVSSYSVDSLGGGVNIGYPISETSRLSFGLTVQQDDLDTG
RYTVDEIFDFMEEEGDSFLNFKASVGWSESTLNRGVLATRGHSQSLVFETTIPGSDLSFY
KLDYNGQLFVPMSKDYTLRMHTRLGYGDAYGSTSSLPFYEHYYAGGFNSVRGFEDSSLGP
RSTPSDGTRPGTIADPDQDPLPFGGNVLIQGGLEVLFPMPFVKDQRSLRTSVFWDVGNVF
NTNCPSGAANCSDIDFGDMASSVGVGLTWITAMGPLSFSLAMPVVKPDDADTQVFQFSLG
QTF