Protein Info for Psest_2819 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF18848: baeRF_family6" amino acids 128 to 279 (152 residues), 107.1 bits, see alignment E=2.8e-34 PF18845: baeRF_family3" amino acids 128 to 317 (190 residues), 152.4 bits, see alignment E=3.9e-48 PF18851: baeRF_family8" amino acids 128 to 285 (158 residues), 53.1 bits, see alignment E=8.3e-18 PF18849: baeRF_family7" amino acids 129 to 280 (152 residues), 65.4 bits, see alignment E=1.7e-21 PF18855: baeRF_family11" amino acids 130 to 278 (149 residues), 38.9 bits, see alignment E=2.7e-13

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_1560)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPS1 at UniProt or InterPro

Protein Sequence (388 amino acids)

>Psest_2819 hypothetical protein (Pseudomonas stutzeri RCH2)
MNRLLDRETLTNLLAQRDGPCLSVYQPTHRSFPERQQDPIRFKHLVRQLEDTLKQQGHAE
QAPALLEPFYALIDNNDFWNHNLDGLAAFGAKDYFQVYRLQRSVPEMAAANSRMHLKPLV
RIAQSADRYQILCLSRDSVRLFEGNRDALDEVKLHEAVPKTLADALGSDLTDKGQSGFPQ
GYSRASERGDPMQVEAGGSGKQAEIDRDRDRYFREVDRTILEHHSKPSGLPLILAALPEQ
QPHFRRLSHNPNLLPEGIEMGLHALSIEELRSKSWMVMQPRYLKRLAGLLDQFGASHGQG
LASDHLEDIGQATRQGRVATLLVEAERQIPGHVDKNDGTATPAPEGDVNTPDLLDELTIW
TLEQGGDVVVVPTERMPTGTGAAAIYRF