Protein Info for Psest_2817 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF00126: HTH_1" amino acids 7 to 63 (57 residues), 79 bits, see alignment E=2e-26 PF03466: LysR_substrate" amino acids 89 to 285 (197 residues), 155 bits, see alignment E=1.8e-49

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_1562)

Predicted SEED Role

"Transcriptional regulator, LysR family, in formaldehyde detoxification operon" in subsystem Glutathione-dependent pathway of formaldehyde detoxification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNE0 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Psest_2817 Transcriptional regulator (Pseudomonas stutzeri RCH2)
MNRWEGLDEFVAVAECGSFMRAAKRLRVSSSHVSRQIARLEERLQARLLYRTTRRVSLTE
AGHTFFARCQRLIEERDEAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQ
LRVDIELTNRTLDLVQEGYDLAIRLGKLGESRLVATRIAPRAMYLCAAPDYLERYGRPHT
LSELARHNCLIGTSDIWSFQIEGREQHFKPSGNWRCNSGEAVLDAALRGFGLCQLPDYYV
QGPLQRGELVSLLEANQPPDTAVWAVYPQRRYPLPKVRLLVEALKVGLARRHEYAGGPS