Protein Info for Psest_2763 in Pseudomonas stutzeri RCH2

Annotation: Cellobiose phosphorylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2843 transmembrane" amino acids 163 to 181 (19 residues), see Phobius details amino acids 408 to 433 (26 residues), see Phobius details amino acids 439 to 461 (23 residues), see Phobius details amino acids 816 to 835 (20 residues), see Phobius details amino acids 841 to 862 (22 residues), see Phobius details amino acids 938 to 960 (23 residues), see Phobius details amino acids 966 to 984 (19 residues), see Phobius details PF10091: Glycoamylase" amino acids 1295 to 1502 (208 residues), 62.4 bits, see alignment 6.9e-21 PF06165: Glyco_transf_36" amino acids 1556 to 1804 (249 residues), 225.3 bits, see alignment E=1.4e-70 amino acids 2067 to 2307 (241 residues), 266.7 bits, see alignment E=3.2e-83 PF17167: Glyco_hydro_36" amino acids 2337 to 2765 (429 residues), 396.2 bits, see alignment E=2.3e-122

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPM2 at UniProt or InterPro

Protein Sequence (2843 amino acids)

>Psest_2763 Cellobiose phosphorylase (Pseudomonas stutzeri RCH2)
MTSVFRHILGRQQRSPVWSDLAPVREELFGTERLEHHARSLAAAQPITKRPPVVSSLHAR
LSENAAVLLAAYRSSASELEAGRSVVPAAEWLLDNYHLVEAQIREIRDDLPPGFYRQLPK
LAEGPFAGYPRVFGLAWAFVAHTDSHFDPETLRRFIVAYQQVQPLTIGELWAVAITLRIV
LIENLRRLSDQITDGSITRAAADALASRLLCAASAKRTLEDEIATRGSETMSVVFAAELA
KRLRDQDPRTTPALGWLEEELGRQGSTIDEVVQHSQQRQGASNVSVRNVITSMRLISDID
WTELFESISLVDARLRADSAFASMDFPTRNLYRSAIEQLARGSSATELEVAEAALSAARA
APTTDLAQDERVGDPGYHLIGEGRLALERSIGFSAPLGLRLSRFNVQLGIVGYVGAILLV
TALLLSVGLQALAGVGVTAGWLALLAVVAFLPVTDVATTLINRLVTWRFGAMALPALDLT
AGVPQSLRTLVAVPTLLTSEADLLEQIERIEVHHLAGAGGDLTFALLTDGLDADQETLPG
DAHLLAVAVAAIADLNRRYGPAPGGSRFLILHRRRQYNPSEGCWMGWERKRGKLHELNRL
LRGASDTSYMPLAGCAQQVPSDVRYVITLDADTRLPRDAAMRLIGKMAHPLNRPRFSEAE
QRVINGYAILQPRVTPSLPVGREGSFYQRVFSSPGGMDPYAAAVSDVYQDLFGEGSFTGK
GIYDIDAFEAALAGRVPENSMLSHDLFEGVFARAGLATDVEVVEEFPSRYEVSGKRQHRW
TRGDWQLLPWIFGARRGAQALPDIGRFKMLDNLRRSLVAPITLLALTLCWLLPLPAALIG
SALILVTMAIPAFLPICFALLPARSGICAQSHLRRLLGDLRLAASQTGLNLAFLPDQAWR
MGDAIVRTLSRLAARHHLLEWTTAAQSAISPRLKLSGFYRGMAGGIALGVGTALFALLIA
PGSWPVVLPFALLWLCAPAIALWASRSPRIAPGQQLAEADAEELRLIARRTWRFFETFVT
PDDNMLPPDNFQEDPRPVVARRTSPTNMGLYLLSAITARDFGWAGTLQTLDRLEATLGSM
SRLQRHRGHFFNWYATEDMRVLEPAYVSAVDSGNLAGHLIAIANACEEWLDAPTAPNARA
GLHDTLLLIRQAMAALPTTSGKRGRALSDLLDQIAAQLGEEQALDTLSATLHQLAEKAMR
LSLEVAPPSADDQSSDLHFWVDALGRSLSEHIRDRQLQGDTLSETEARLHEISRTTRQMA
LEMDFAFLLDPERKLLSIGYGLAENSLDPSCYDLLASEARLASLFAIAKGDVTTRHWFRL
GRTATPLGNGSALISWSGSMFEYLMPSLVMRAPAGSLLEQTNRLVVQRQQDYGNDRNVPW
GVSESAYHARDMEFTYQYSNFGVPGLGLKRGLAENLVIAPYATGLATMVDAPGALANYRR
LAQMGAVGRYGFYEALDFTPARLPDGQSVTIVRNYMAHHQGMTIVAIANTLQDGQMRARF
HREPMIQACELLLQERMPRDVAIAHPRAEEVKIRAVEASGDPQALRRLNTCAAGAAPVTH
LLSNGRYAVMLTAAGAGYSRWRDIAVTRWREDASRDDYGSFIFLRDTADGRVWPAGGQPS
DSDAVSHEVIFAEDRAEFVRHDLDLTTTLDVLVSGEDDGEVRRVSLVNSGAYAREIELTS
YSEVVLTTPSTDNAHPAFAKLFVVTEYLPDFGALLATRRLRSESERPIWAAHFAVVEGEV
VADPQYETDRARFIAQRPNVASAAVITEGLALTNTVGTVLDPIFALKYRIKVAPGKVARV
AFWTFVAGSRDEVLNLIEKHHDRSAYDRAKTLAWTQAQVQLRHLDVKPAEAADFQRLGAP
ILYADPQFRAPSAAIIEGAGAQSGLWPHSISGDLPIVLLRIDDVQDIAQVRQLLRAHEYW
RMKRLAVDLVILNEHASSYLQDLQIAIETAVRSSQSRPRFGAELAQGSVYMLRADLLSTE
ARALLRSVARVSLIARRGPIDKQLANQLLASQVPLMAPRLSARPSTAIAQPSAIDVSPHL
ECFNGLGGFDKDGREYVTLLDAGANTPAPWINVIANPQFGFQVSAQGSGYTWAENSRENQ
LTPWSNDPVTDPCGEAFYVRDEDSGALFSPTAQPIRDTGLYVARHGHGYSRFEHQADGIA
MDLLEYVPLADPIKISRLTLRNLSAVPRRLSVTRYSEWVLGTARGANAPFIITERDESCG
MLLARTPWSSAFPGRVAFADLGGRQTAWTADRRELLGRNSGPATPAALLTGAPLTGATGA
GMDPCAALQTRVELAAGESIEIIAFIGQCPSADAARALVERYRQTDLDAVLLEVTEHWRS
ALGAVQVKTPDRAMDIMLNGWLLYQTLACRIWARSAFYQASGAYGFRDQLQDGMALTFSR
PEATRSHILRAASRQFPEGDVQHWWLPHSGQGVRTRISDDRVWLAFATATYIQVAGDATI
LDEPVTFLEGPLLKPGEHDAFFQPMMAGDAAPLFEHCARGLDQCLELTGELGLPLIGGGD
WNDGMNRVGEDGKGESVWLGWLLLRTIELFAPLADQRGTVADVQRAERWRKHAQALADSL
EEKAWDGEWYRRATFDDGTWLGSKDSDECRIDSIAQSWAVLSGAADPARAKQAMASVRQH
LIREQDGLALLFTPPFDKTEKEPGYIKGYPPGLRENGGQYSHAAMWAMLAFAKLGDGDAA
CRMFSLLNPINHALTPEGSRRYKVEPYVVAADVYGVAPHKGRGGWTWYTGAAGWMHRAGV
EGILGIRREGEWLIVDPCISSQWPGFEATITLGETRYAIRLENPTQANRGIQHAQLDERS
LDCTNGWVRLALDEGQHQVVLRL