Protein Info for Psest_2746 in Pseudomonas stutzeri RCH2

Annotation: Protein of unknown function (DUF2855).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF11017: DUF2855" amino acids 39 to 356 (318 residues), 356.7 bits, see alignment E=1.1e-110

Best Hits

KEGG orthology group: None (inferred from 66% identity to pol:Bpro_3464)

Predicted SEED Role

"Bll1370 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GN76 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Psest_2746 Protein of unknown function (DUF2855). (Pseudomonas stutzeri RCH2)
MSVIRQLQNNKKDMQQTRIQTRPMPELKAGEALLRISRLALTTNNVTYAAFGETPHLRYW
DFYPTGDSEWFHMPAWGFAEVVESTVDGLAKGERFYGFWPIASHVLMQPVRVSERGFYDG
AEHRLELTSAYNQYQRISSDAAYRAESENYQMLLRPLFITSFMLADFLDDNAFFGARQIL
MSSASSKTAYGTAFCLQDNPAVQLIGLTSAGNTDFVKGLGCYRQAVGYDQLASLDPSVPT
LYVDFSGSADLRRQIHSHFKDALVYDCFAGSAQNHEYRKTDATLAGPQPQPYFAPYQIKK
RNADWGPAEVTRRFNEAQLAFIARVSDTQQPWMQVNEHAGLQAAQTLAEALIKGDINPLE
GNAVVLD