Protein Info for HP15_2622 in Marinobacter adhaerens HP15

Annotation: AzlC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 76 to 99 (24 residues), see Phobius details amino acids 137 to 162 (26 residues), see Phobius details amino acids 168 to 185 (18 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 216 to 231 (16 residues), see Phobius details PF03591: AzlC" amino acids 24 to 163 (140 residues), 135.9 bits, see alignment E=6.3e-44

Best Hits

KEGG orthology group: None (inferred from 78% identity to maq:Maqu_2877)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJM2 at UniProt or InterPro

Protein Sequence (248 amino acids)

>HP15_2622 AzlC family protein (Marinobacter adhaerens HP15)
MSVASYSYQLQPARVRVEFFRLLPISLFVVAFGAAFGLAATQKGLEPLQAVLMSATVFAG
ASQFAAVDMWGTEVSVLPMIAVVFAINSRHLLMGASLYPMLKDVSPGKRYGLLLLLTDAN
WAVSAQEYQSGRRNLEVILGGGLALWLAWIIGTGLGVYFGGLLQDPKSLGLDMVLGCFLL
AMALGGKKSPRVLVAWTVTALASLAAWKWLPANTHVVVGALAGGAIGFFWLERKPAPASD
AEDSTHDR