Protein Info for PGA1_c27050 in Phaeobacter inhibens DSM 17395

Annotation: phospholipase D-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 PF00614: PLDc" amino acids 179 to 203 (25 residues), 22.5 bits, see alignment (E = 9.3e-09) amino acids 390 to 415 (26 residues), 26.7 bits, see alignment (E = 4e-10) PF13091: PLDc_2" amino acids 285 to 439 (155 residues), 40.2 bits, see alignment E=2.8e-14

Best Hits

Predicted SEED Role

"FIG00918187: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EQ31 at UniProt or InterPro

Protein Sequence (505 amino acids)

>PGA1_c27050 phospholipase D-like protein (Phaeobacter inhibens DSM 17395)
MRTSDIPDDASDPEVFEVLVTAAQAWPAFERAVLGAKKEVRASFRIFDFSTVLLSPEARA
IGETWADLVEHVVARGVDFHLVISDFDPVMGPELHQMTKRSVAQAQDIAARVARRATDDP
VGHLQVEGAMHPARAGLLPRLAFGPFVKMKKTQIPDYGQSTLSEDAPGDEVLPEVRPVTH
HQKLAVIDERLLYAGGLDLNDRRRDTLKHDLPSRETWADVQLLVSGPEAREAAHYLRHFQ
RYVAGKETPPEGQLIRRTISAPRRFGFWAVSPRTVLREIEEDYLAAFERAERLIYLETQF
LRSSVLADGLAAAAKRNPDLSLILVLPALPDDVAFEGNRDLDARYGMALQGQALETVQTA
FGERATIASPVQPFLAEREAPSVLAGSPVIYVHSKVLIADDSFAMIGSANMNGRSMRWDT
EVALRITDKQRVAKTWQAMCAHWWHREQMPAEARAVETAADWWHREIQRNGVRLPQTRSG
FLVPHDPQKMADLHQSLPGATEDVV