Protein Info for Psest_2702 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 961 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 462 to 587 (126 residues), 29.6 bits, see alignment E=3.2e-11 PF08447: PAS_3" amino acids 490 to 562 (73 residues), 48.9 bits, see alignment 1.3e-16 PF00512: HisKA" amino acids 600 to 662 (63 residues), 64.5 bits, see alignment 1.5e-21 PF02518: HATPase_c" amino acids 714 to 822 (109 residues), 94 bits, see alignment E=1.6e-30 PF00072: Response_reg" amino acids 840 to 949 (110 residues), 62.6 bits, see alignment E=7.7e-21

Best Hits

KEGG orthology group: None (inferred from 63% identity to avn:Avin_03280)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMH6 at UniProt or InterPro

Protein Sequence (961 amino acids)

>Psest_2702 PAS domain S-box (Pseudomonas stutzeri RCH2)
MRSKTFLGLRKWIWRAFVQSALIPLVLVEMVLIAVYLLSNNAIRDTQIEYLRQSAVEDLE
ASANQEARVVVEQLTQVRALTETYRNLTTRALLDESTPVLPQLALSDNGVRYTPVDDGGA
AVFYANSTAAEQQDLQKVAKLSVLEPLMKEMELNNPLVASLYFNSWDSLNHIYPWFLTPD
QYPHDMVIPNYNFYYLADATHNPERKVVWTDVYVDPAGHGWMMSAIAPVYRGDFLEGVVG
IDITVGGILEQIGRLQVPWNGYAMLVGAGLNILAMPEPGEADFGLDELTEHSYDDAVRRE
IFKPDDFRLDKNPQTVALAKAIDAKPSGVESVVLNGRAHLVAWSVIEPTGWRLLTVVDEE
DVFSRTNALASRYQQIGYLLIGGLVLFYLAFFAYMWTRARRLSQQLLAPISGISQMMDQI
GQGNWLPARVSSDIRELDQMAGHASLVGMQLENSEAQRLRTHERLELVLESATESLWEIN
YQTGMTRLRGRFCQRFGLSSDVIALEDFFLRVHPDDVERVRQAHVHMANGTDDSYSGEFR
FAGRDGEYHWLLSRGRVLERDPVSRKATLVAGTHVDIDGLKRIEAELRQTILDAQVANQA
KSRFISSMSHELRTPLNAIQGFAQLMRMKQDVRPDGNADFLDEILRASRHLNQLVGDILD
WSGTQLQSTSVELQMVNVSKLMQESAELVRAEVAERGLQLNVDLPESTLQVRADPRRLRQ
VLLNLLSNAIKYNKPAGQVTLSYQVAAGYIRLLVEDTGLGIASDQQNRVFEPFQRLGREN
TMIQGTGIGLALCQELAALMRGRMGLHSEPGIGSSFWIELPLLGSEAPLEAVMRQGLPRV
FYVEDNPASQFLVRTALADIALVEVASNGVSALQQILAAPPDLVLLDLKLPEMNGEELLS
RLRRDVRCQGVPVVVLSAVTGAEALRAASLDCQGLLRKPLDMQELRGLIEALLAEVAQGV
V