Protein Info for Psest_2679 in Pseudomonas stutzeri RCH2

Annotation: Predicted sulfurtransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF17773: UPF0176_N" amino acids 6 to 96 (91 residues), 100.8 bits, see alignment E=4.6e-33 PF00581: Rhodanese" amino acids 119 to 211 (93 residues), 37 bits, see alignment E=3.8e-13

Best Hits

Swiss-Prot: 86% identical to Y1693_PSEMY: UPF0176 protein Pmen_1693 (Pmen_1693) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: K07146, UPF0176 protein (inferred from 92% identity to psa:PST_1685)

Predicted SEED Role

"Rhodanese domain protein UPF0176"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPE9 at UniProt or InterPro

Protein Sequence (311 amino acids)

>Psest_2679 Predicted sulfurtransferase (Pseudomonas stutzeri RCH2)
MTQRIVVAALYKFVSLPDYVALREPLLEALLLHGIKGTLLLAEEGINGTVSGTREAIDAL
LDWFRRDDRLADIDHKESYCDEQPFYRTKVKLKKEIVTLGVDGVDPNKQVGTYVEPRDWN
ELIADPEVLLIDTRNDYEVAIGTFEGAVDPKTKSFREFPEYIKAHYDPAKHKKVAMFCTG
GIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPEAQSRWRGDCFVFDNRVTVRHDLSVG
EFDLCHACRAPLSVEDRQSEHYAPGISCPHCWNSLSEKTRAGARERQKQIELARQRNQPH
PIGRDPRELDR