Protein Info for PGA1_c25120 in Phaeobacter inhibens DSM 17395

Annotation: ATP synthase delta chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR01145: ATP synthase F1, delta subunit" amino acids 11 to 181 (171 residues), 135.7 bits, see alignment E=9.6e-44 PF00213: OSCP" amino acids 11 to 182 (172 residues), 172.5 bits, see alignment E=4.5e-55

Best Hits

Swiss-Prot: 84% identical to ATPD_RUEST: ATP synthase subunit delta (atpH) from Ruegeria sp. (strain TM1040)

KEGG orthology group: K02113, F-type H+-transporting ATPase subunit delta [EC: 3.6.3.14] (inferred from 83% identity to sit:TM1040_2089)

Predicted SEED Role

"ATP synthase delta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DSY9 at UniProt or InterPro

Protein Sequence (186 amino acids)

>PGA1_c25120 ATP synthase delta chain (Phaeobacter inhibens DSM 17395)
MSEPASISAGIAARYATAIFEIAEESKALDSLETSINDLSAALADSEDLRDLITSPLVSR
QEQGTAITAIAKKMGLDPVLSNALTLMAEKRRLFVVPALLDALRVRLAETRGEITADVTS
AKALTKTQSEKLAKTLAERTGKKVVINATVDESIIGGLVVKVGSKMIDNSIRSKLNSLQN
AMKEVG