Protein Info for PGA1_c02600 in Phaeobacter inhibens DSM 17395

Annotation: putative high-affinity branched-chain amino acid transport system permease protein LivM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 254 to 285 (32 residues), see Phobius details amino acids 296 to 321 (26 residues), see Phobius details amino acids 327 to 343 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 48 to 318 (271 residues), 115.2 bits, see alignment E=1.6e-37

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 73% identity to sil:SPO1850)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DX25 at UniProt or InterPro

Protein Sequence (361 amino acids)

>PGA1_c02600 putative high-affinity branched-chain amino acid transport system permease protein LivM (Phaeobacter inhibens DSM 17395)
MRIQFKTSYDHDIRLFPDRHSLLVYGALVMLALALPLLINEFYIGEVTNVLIWAIAGLGL
MLLTGQTGQASLGHAAFLAIGCYANTILIEQGLPFIVAFPLAGVITGIVGGIIAIPALRL
HGIYLAIATIALSILADDIIVLLEPWTGGVSGKFPDVIRLFGIEIERWTMPVRFYYLVFG
VTVICTLFYRNLLRSPLGRAFAAVRDSEVSATAMGVHIARTKATAFGLSCMITGWAGALM
GYYAGAFNNETFSLVISITLLMMIVIGGLGSIHGAFFGAVVVAFLPQGLSILKDSVLGSG
VAIPGLETGVFGMILILFILFEPMGLYGRWLKIRIWFELFPFARKDMFRRQKSYLKTERL
R