Protein Info for Psest_2510 in Pseudomonas stutzeri RCH2

Annotation: chromosome segregation protein SMC, common bacterial type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 PF13175: AAA_15" amino acids 1 to 139 (139 residues), 38.3 bits, see alignment E=3.2e-13 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1153 (1152 residues), 1188.7 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1146 (1144 residues), 226.1 bits, see alignment E=9.3e-71 PF13476: AAA_23" amino acids 5 to 232 (228 residues), 73.6 bits, see alignment E=8.9e-24 PF13304: AAA_21" amino acids 27 to 216 (190 residues), 31.5 bits, see alignment E=4.5e-11 PF06470: SMC_hinge" amino acids 523 to 613 (91 residues), 26.1 bits, see alignment 2.4e-09

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 93% identity to psa:PST_1855)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMM4 at UniProt or InterPro

Protein Sequence (1162 amino acids)

>Psest_2510 chromosome segregation protein SMC, common bacterial type (Pseudomonas stutzeri RCH2)
MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES
MTDVIFNGSNTRKPVTQASIELIFDNSDGTLTGEYAAFAEISIRRRVTRDSQNTYFLNGV
KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRET
ENRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQEYKAEERQLKAQLSALRWQAL
NELVGQREQVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQGRFYSVGGDI
ARVEQSIQHGQQRLRQLQDDLREAEQARLETESHLGHDRTLLATLGEELAMLEPEQELSG
AAAEESAVQLEEAEAAMQAWQEQWERFNQHSAEPRRAAEVQQSRIQQLEQSLERLAERQR
RLDEERALLAADPEDVAILELGEQLAASELDLEALAAAAEDINERLEQLREELQQATRTQ
QQMQGELQRLNGRIASLEALQQAAMDPGKGVAEWLREQGLADRPRLVEGLRVEPGWELAV
ETVLGGDVNAVLLDEFVAIDLAGFEQGDLRLVSPRQGDVSRPGSLLDLVESRLDLSPWLG
RVRPVDSLEQALAARAALGEDESVISRDGYWVGQHFLRVRRASEAESGVLARGQELERLL
AERDEREAALAVVEERISELRAAQSRLEEEREQQRRRQQEEARIQGDLKAQLSAGQARLE
QLGLRRQRLDEELAEQQDRREIETEQLGEARLQLQDALDAMAHDAEQRETLLASRDGIRE
RLDRIRQDARQQKDHAHQLALRVGSLKAQHESTRQALERLEQQFERAIERREQLTLNLEE
GEAPLEELRMKLEELLERRMGVEEELKHARLALEDADRELRDAEKRRTQAEQQAQLLRGQ
LEQQRLDWQGLSVRRKALQDQLHEDGYDLHGVLGTLPADASEQGWEAELERLAQRIQRLG
PINLAAIDEYQQQSERKRYLDAQNDDLVEALDTLENVIRKIDRETRNRFKETFDQINSGL
QALFPKVFGGGNAYLELTGEDLLDTGVAIMARPPGKKNSTIHLLSGGEKALTALALVFAI
FQLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSEKVQFIYITHNKIAMEMADQLMGVTM
HEPGCSRLVAVDVEQAVALAEA