Protein Info for HP15_2398 in Marinobacter adhaerens HP15

Annotation: aminotransferase, DegT/DnrJ/EryC1/StrS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 TIGR03588: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase" amino acids 1 to 380 (380 residues), 567.9 bits, see alignment E=4.7e-175 PF01041: DegT_DnrJ_EryC1" amino acids 9 to 380 (372 residues), 371.1 bits, see alignment E=6.7e-115 PF00155: Aminotran_1_2" amino acids 25 to 164 (140 residues), 27.4 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: None (inferred from 80% identity to psa:PST_3839)

Predicted SEED Role

"Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PH59 at UniProt or InterPro

Protein Sequence (385 amino acids)

>HP15_2398 aminotransferase, DegT/DnrJ/EryC1/StrS family (Marinobacter adhaerens HP15)
MIPYGKQEISQADIDSVLEVLQSDFLTQGPKVPEFESKVAEHVGAKHALAVNSATSALHI
ACMSLGLGPGDWLWTSPITFVASANCGLYCGAKVDFVDIDPKTYNMCPKALAAKLEQAEK
SACLPKIVVAVHLCGQPCDMAEVHRLSKKYGFRVIEDASHAIGGKYRGEFIGNSRYSDIT
VFSFHPVKIITTAEGGMALTNDENLASRMNLLRSHGITRDPRLMTREADGPWYYQQIDLG
FNYRMTELQAALGVSQMNRLDAFVARRHELAGRYNEILARLPVTTPWQHPDSYSGLHLYV
IRLSLNEVDKSHREVFESLREQGIGVNLHYIPVHTQPYYESMGFNASDFPEAMAYYREAI
SLPMFHGMTYEQQDQVSSALEFSLV