Protein Info for Psest_0245 in Pseudomonas stutzeri RCH2

Annotation: Choline dehydrogenase and related flavoproteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 531 PF13450: NAD_binding_8" amino acids 35 to 63 (29 residues), 22.1 bits, see alignment (E = 3e-08) PF00732: GMC_oxred_N" amino acids 79 to 296 (218 residues), 190.4 bits, see alignment E=7.7e-60 PF05199: GMC_oxred_C" amino acids 384 to 516 (133 residues), 85.4 bits, see alignment E=1.1e-27

Best Hits

KEGG orthology group: None (inferred from 88% identity to psa:PST_4001)

Predicted SEED Role

"FIG022869: Oxidoreductase, GMC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GFR2 at UniProt or InterPro

Protein Sequence (531 amino acids)

>Psest_0245 Choline dehydrogenase and related flavoproteins (Pseudomonas stutzeri RCH2)
MPVADLFAEGLARGWTTHDGSRLQRDLTLETDIAIVGSGAGGATSAEVLSAAGYKVLLIE
EGPLRTSGDFDMQEGRAYRSLYQEAIGRTSKDGAITILQGRAVGGTTLVNWTSSFRTPPQ
TLQHWASEHGVSGLSAETLQPWFERMEQRLGIAPWTVPPNANNAVLQRGCESLGQHWAVI
PRNVRGCWNLGYCGMGCPTNAKQSMLVTSIPAMLENGGELLYLSRAERLLMQGERVVGLD
CLGMDERGVEPNGHRIRVVARHYILAGGGINTPGLLLRSNAPDPHQRVGKRTFLHLTNFS
AAQFDERIDAFSGAPQSIYSDHFQWHDGVTGPAGYKLEVPPIHPALATTLLGGFGPQNAQ
RMAALPHTHAMIALQRDGFHPDSAEGTVELRSDGSPVLDYRMTDYAWNGIRRAFHSMAEI
QFAAGARAVLPLHGDARYVRTPRAARELIEGLDLALYRTHLGSAHVMGGCAMGEDPRQAV
TDSLGRHHQLANLSIHDGSLFPTSIGANPQLSIYALCAKLASDLDDRLKKS