Protein Info for PGA1_c24350 in Phaeobacter inhibens DSM 17395

Annotation: Uncharacterized protein involved in outer membrane biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF05170: AsmA" amino acids 4 to 182 (179 residues), 44.7 bits, see alignment E=4.5e-16 amino acids 289 to 532 (244 residues), 52.8 bits, see alignment E=1.6e-18

Best Hits

Predicted SEED Role

"AsmA family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F1C9 at UniProt or InterPro

Protein Sequence (650 amino acids)

>PGA1_c24350 Uncharacterized protein involved in outer membrane biogenesis (Phaeobacter inhibens DSM 17395)
MKLIIRVVIALVVAMVLLLGALLLLPGEKLAQLAAAQIEKQTGRTVTFGGRVGYTLWPTL
GVKADRVALSNAPWAGPEPMLTAERLTIGVAAADLIAGKVRVTELSAVLPQLNLSTRADG
TGNWVLDPASDGETKSVPATPGSMDSLPVSIEALNLTGATLRYAPHGETPIEMKQIDLAL
QWPDPTGTVVADITLRPAGDPVQIEAEIGTFEAFLAGQVSSVGATVTAADTFLRFDGRAN
TAGAATGRMTGKSTDLARSLAVLGAAQGIEVPAVKTWLLGSDLTYTTDGRLALRDLTLEA
DANKLRGAADVTLGDVPKVTARLSGDQLDLSALLPSGDTDLPAAAAAGAGDDPVNDGWSR
ERMDFGWLAALNTEIALDVQGVETGSVRLGPSKLDLSLDNSRAVLKFQPATVFDGQLQGQ
VVVNNRNGLSVGGKLSFQNIRLEQALGQTMGYDRLNGEALGELEYLGVGNSVAEIMSSLS
GKGWLEVGKGFFTGFDLEQLMRSGSGNGGSTVFDQLTASYSMEGGNLTNNDLLLTLRGLR
AEGEGRIGLGAQDLDYLFTPSLQRGDGSTRLSIPVAITGPWSDPKIRPDLKRALEPEIDA
VEQQAKDRLREKLSEELDTEIAPEQDINEAIRDRIEKEAKDQLLRLLGGD