Protein Info for HP15_2341 in Marinobacter adhaerens HP15

Annotation: surface antigen (D15)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 PF17243: POTRA_TamA_1" amino acids 3 to 73 (71 residues), 43.9 bits, see alignment E=3e-15 PF01103: Omp85" amino acids 324 to 546 (223 residues), 126.4 bits, see alignment E=2.9e-40

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 70% identity to maq:Maqu_2012)

Predicted SEED Role

"Uncharacterized protein YtfM precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PGJ4 at UniProt or InterPro

Protein Sequence (549 amino acids)

>HP15_2341 surface antigen (D15) (Marinobacter adhaerens HP15)
MEGDYPDLKSNAQAFIGEVEGRSASNLRRYAPTAVGQAEEALRALGYYSPLIEWRIEEGD
SDTTATLVLSITPGEPVRVTSRTVEIRGAAASDERFTADLPEHPAEGDILNHGQYASLRD
TIQTRARRRGYFDGTFVTRTLEVDPATRSAAVTLIYDSGERYRLGEVTFEEGHWFEIGLL
EQFVSFEPGIPFHADEVARLNRDLQNSGYFSSVDIDASPGSAEDGVIPVRVDLTRRDARS
VAAGVGFSTDVGPRFRGNWREHWINPMGHKRGAETELSVPRQNLSTWYELPLDPPMTDLI
RLSAGYQREDIENVESELLSLGQQWQHQLDNGWLQILSLRWEGERFNIGNDEKGTSTLLL
PGAGYSKIHTDSPLDPSRGYRLQFDVTGSHRAALSDVDILHVNALVKGLFTLADKHRFLG
RLQAGAVATNRFEDVPPSLRFFAGGDQSVRGYGYETLSPENDNGVPVGGRFLMVGSAEYQ
YQFADKWRAAMFVDHGNAINNPSDPLATGAGVGIRWISPVGPLRLDIAKGLDREFGGDWR
IHFSMGPEL