Protein Info for HP15_2340 in Marinobacter adhaerens HP15

Annotation: protein containing DUF490

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1227 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04357: TamB" amino acids 906 to 1227 (322 residues), 183.4 bits, see alignment E=4.2e-58

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 56% identity to maq:Maqu_2011)

Predicted SEED Role

"FIG00784334: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PGJ3 at UniProt or InterPro

Protein Sequence (1227 amino acids)

>HP15_2340 protein containing DUF490 (Marinobacter adhaerens HP15)
MVGLAVLILVPVLVVAAVLLALRSETGTAWVIEQVPGLQVENDRGSLFGRWQADHLQWRG
YGVEVVVESPLVDWSPSCLFRKQLCIENLEAETLEVSQLPPADKAEGGSPITLPGVDLPL
ALNISGVRLGPFTFNGNKVWDRFELDAGGSGAAWNIKRAWYQLGEYTVSAAGRIETRRDW
PVNLEVKADIPPPYGDEWLLDARLSGSVRDLMVAASSRGYLDAELSGEVEPLDPALPAQL
RLTSDQFRAAQALPETLVLNDWSVDARGSLQQGFRTRGQATLPGTTGPVRLTLEGLATIR
AAESIRIELAADRENGAGQDTVVANGNVSWSEGLEASADIRLRGFPWYTLIPGFEPPVVT
LRSLDGTVSWREGNYHAELQAGVEGPQGNAELTTTVDGDAEQTTLTNLTVSTGAGSLTGN
GSVNFSGPLSWQAALRLKDFNPGYWVPVLEASLSGDVTTEGQLGDGPVPAMNAGWDLKGD
WRSNPASLQGRLDTSSGSWELSDLQLLVGDNRIEGSGTWGDVLRGDLALNLPAPEIVLPG
LTGNLQATLTAEGTPERPKGELSASGKNLGWQDELAIETLSLEADLQDGMRLVSRLQAEN
LNGFGQELETLTLEANGTQGKHTVSIGARHAEADLELGFAGGAGADWRTWQGELSRGVID
LPEQSQQWRLQAPATLAYKADGELTFGNHCWRWEESTVCAEDQTLLPVPRIAYRIDRFAT
VAFAPLLPETLRWDGWINGEVDFTTTGDGPDGRLFLDAGEGQFQLLVDGEWESLAYNTLT
TEVALKPKQADLAVRLSGPELGDFTLDMNLDPNSDDRNVEGSFSLEGLDIALAGLLSGLD
EVAGRVNGQGQLSGPLMKPAVTGELHLVNGRVSDPRLPVPIEEVIASVQFGGYSAEISGR
IRSNARSQTIVDGEIDWQQSPRGEITISGSRVPFNLEPYAQLEVEPDLTIVFSEGALEVS
GQVGVPRGDIEIQGLPDQAVSVSEDEVIVGVEREEPVVRSLNMDVTVVVGEDQVTFAAFG
VTGDLEGSLRIGNDMDTRGTLQLVNGQYEAYGQELKLRRARLLFVGNLTQPYLDIEAVRT
VDTVVAGIRLTGPVQSPQTEVFSNPDMPQTEALSYVILGRAPQSRGDEGQMSRAALSLGL
TQANKVTGQIGEEFGIRQLTLEAEGSGDQTSVVASGYLTDELSVRYGVGIFEPITTVALR
YDLGRYFYLEAASGLAASLDIFYTRDF