Protein Info for Psest_2426 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 821 TIGR00229: PAS domain S-box protein" amino acids 19 to 145 (127 residues), 33.3 bits, see alignment E=2.3e-12 PF00989: PAS" amino acids 30 to 134 (105 residues), 24.6 bits, see alignment E=6.4e-09 PF08447: PAS_3" amino acids 44 to 131 (88 residues), 67.1 bits, see alignment E=4.1e-22 amino acids 308 to 395 (88 residues), 56.1 bits, see alignment E=1.1e-18 PF00512: HisKA" amino acids 451 to 515 (65 residues), 32.5 bits, see alignment E=2.1e-11 PF02518: HATPase_c" amino acids 559 to 678 (120 residues), 67.3 bits, see alignment E=4.8e-22 PF00072: Response_reg" amino acids 704 to 815 (112 residues), 55.3 bits, see alignment E=2.2e-18

Best Hits

KEGG orthology group: None (inferred from 87% identity to psa:PST_1935)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJL3 at UniProt or InterPro

Protein Sequence (821 amino acids)

>Psest_2426 PAS domain S-box (Pseudomonas stutzeri RCH2)
MAEVVRLRAALVDRSTEDTQVRYRLASNVTSDAVWDWDLDADQVLWNDALELAYGHSLAN
VDSSGQWWLDHIHPADRERIHQSIHAVIDSGGTTWTDEYRFQRVDGSYADILDRGHVIRT
VQGRAVRMIGAMLDLTRVRAAEAALRQSEERFSAILETIEAAFAIVQVKFDADDRPVDYQ
FVEVNPAFERQAGVDLRGKWVTEYAPELEQFWFDTYGHVAKTGEPANFESFALAFERWFD
VRAVRVGDPADRRIAILFNDVTQRRDAENRLRISEALARENIQRVQLALAAGAIIGTWNW
DLPSNQFTVDDGFARAFGLDPALGREGLKLEQIIATVHPEDREGLIAAIDDVIARGGAYA
HQYRVRRADGRYYWIEANGRVDHAPAGTALSFPGVLIDVEDRRSIEAERDRATAALRALN
ETLEQRVAERTAELIQAEEKLRQSQKMEAVGQLTGGLAHDFNNLLAGISGALELMSMRIA
QGRLNDIDKYMLSAQSAAKRAAALTHRLLAFSRRQTLDPRPVDVNLLVEGMTELIQRTVG
PSIRLETISAPDLWPASVDTSQLENAILNLCINSRDAMPDGGRITIETANQWLDSDAAQA
NDLPAGEYLSLTVTDTGTGMTPGVIAKAFDPFFTTKPIGEGTGLGLSMIYGFAKQSGGQV
RISSEVGRGTAMCIYLPRHLGETGIGAVVPAQTAAALTGSCGTILIVDDEPTVRMLLMDV
LGDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGMNGRQMADAGREVRQELKTLF
ITGYAESAALGNSSLGVGMQVLTKPFSIDALAARVLELLRG