Protein Info for HP15_2312 in Marinobacter adhaerens HP15

Annotation: flagellar biosynthesis protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 59 to 88 (30 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 196 to 222 (27 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details TIGR01103: flagellar biosynthetic protein FliP" amino acids 61 to 256 (196 residues), 270.5 bits, see alignment E=4.2e-85 PF00813: FliP" amino acids 61 to 252 (192 residues), 271.1 bits, see alignment E=3.1e-85

Best Hits

Swiss-Prot: 66% identical to FLIP_PSEAE: Flagellar biosynthetic protein FliP (fliP) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 87% identity to maq:Maqu_1984)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PGG5 at UniProt or InterPro

Protein Sequence (258 amino acids)

>HP15_2312 flagellar biosynthesis protein FliP (Marinobacter adhaerens HP15)
MLAATIKRLLPSLIVLAGFVWAPLALAQEPSGIPGIPAFTVTPGEGEGAQEYSVTLQILA
LMTALTFLPAMLMMMTSFTRIIVVFAILRQAIGLQSTPSNQILLGLALFLSIFIMKPVLE
EANRVALQPYMQEEVTSLEAVELASQPFRKFMLEQTRESDLALFMRISDTQYETPQDVSF
WILMPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFV
LVDGWALIMGTLAASYGI