Protein Info for Psest_2411 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 997 PF13426: PAS_9" amino acids 67 to 163 (97 residues), 12.9 bits, see alignment E=5e-05 amino acids 198 to 294 (97 residues), 11.4 bits, see alignment E=0.00014 amino acids 516 to 613 (98 residues), 14.7 bits, see alignment E=1.4e-05 TIGR00229: PAS domain S-box protein" amino acids 174 to 302 (129 residues), 23.2 bits, see alignment E=3.1e-09 PF13188: PAS_8" amino acids 176 to 231 (56 residues), 18.6 bits, see alignment 6.1e-07 PF08448: PAS_4" amino acids 182 to 296 (115 residues), 39.8 bits, see alignment E=2.2e-13 amino acids 513 to 616 (104 residues), 36.9 bits, see alignment E=1.7e-12 PF13185: GAF_2" amino acids 324 to 463 (140 residues), 34.1 bits, see alignment E=1.3e-11 PF01590: GAF" amino acids 324 to 458 (135 residues), 48 bits, see alignment E=8.7e-16 PF00512: HisKA" amino acids 631 to 695 (65 residues), 32.6 bits, see alignment 3e-11 PF02518: HATPase_c" amino acids 738 to 854 (117 residues), 64 bits, see alignment E=7.5e-21 PF00072: Response_reg" amino acids 884 to 990 (107 residues), 63.3 bits, see alignment E=1e-20

Best Hits

KEGG orthology group: None (inferred from 84% identity to psa:PST_1950)

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJJ7 at UniProt or InterPro

Protein Sequence (997 amino acids)

>Psest_2411 PAS domain S-box (Pseudomonas stutzeri RCH2)
MDPAAHPAPDVSSHVFLPDGGELGALIRRFDWSQTTLGPLAGWPASLKTVTAMLLLSPTP
IVLLWGERGIMIYNDAYSVFAGSRHPQLLGSEVREGWPEVADFNDNVMKVGLAGGTLSYK
DQELVLYRNGRPERAWMNLDYSPVFDDQAQPAGVIALVVETTERVLAERELQGQQARLQE
MFEQAPGLMAMLRGPEHVFEMANPAYLRVVGERDVIGKPVREALPEVERQGFIDILDRVY
RSGTAFVGSGIRVGLQRIQGEAEEERLLDFVFQPVTDANGNVAGIFVEGYDVTERAEAEQ
ALRENEQRLRFLDALAKETARSVDADAILSITTRMLGEHLGLSSCAYADMDPDQDGFTIR
GDWAAPGCVSIVGRYRLAAFGALAVSKLRSGEAFIIEDHCAQLPPAEAATFQQLDIAATI
CLPLVKEGRLTALMAIHDRQPRVWSGYELALLTEVTDRSWAHIERVRSAAAVRQREQCFL
EELEAKVAERTAALARSEANIRAVLETSHLYKAMLAPDGSILYVNATALAGIGARFHQLA
GTPFWASPWFAATPGMPETIKAMTQHVAAGDTEHVTISLNMPGGIRIFDFSMRPVLGEDG
NVVALVPEALDISERVATEQTLQQLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRRRM
PPDPALLRLVDNARAGAERGASLTARMLSFARKQELHKTAIDLPVLIEDMRALLLSSLGP
TIQLEVELPPQLARVKTDPNQLETALLNLAANARDAMAGEGRILITAEECALTSEQNGLP
IGRYVCLALSDSGTGMDEVTLKRAVEPFFTTKGVGKGTGLGLSMVHGLAEQSGGRLMLQS
SPGLGTTAEIWLPALDNDEETSAPARSSTPEEKQRQVANALTLLAVDDDELVLFGTAGML
EAAGHRVLTARSAGEALDLLRTNQVDMLITDHAMPLMSGAQLAAVVRETRPQLPILLVSG
YAELPSATPALPLRRLAKPFSQNELLDAVEQLSARRA