Protein Info for PGA1_c23640 in Phaeobacter inhibens DSM 17395

Annotation: Protein of unknown function (DUF1217).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 PF06748: DUF1217" amino acids 68 to 120 (53 residues), 55.1 bits, see alignment 5.1e-19 amino acids 153 to 207 (55 residues), 40.9 bits, see alignment 1.2e-14 amino acids 248 to 292 (45 residues), 28.5 bits, see alignment 7.9e-11 amino acids 320 to 361 (42 residues), 27.9 bits, see alignment 1.2e-10 amino acids 398 to 545 (148 residues), 128.6 bits, see alignment E=1.1e-41

Best Hits

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E2R5 at UniProt or InterPro

Protein Sequence (591 amino acids)

>PGA1_c23640 Protein of unknown function (DUF1217). (Phaeobacter inhibens DSM 17395)
MTFSPYVLGTGIAGWNFLDRTRVQQQQIFEKSPILDRAVQDFTQKIEGIQSSDQLLDDYN
VLKVALGAFGLDEDINNRAFIKKVLDSDLSEPTSFANRLNDNRYLGLAQTFGFGNDAGPQ
LPSSSVEKPYANVASPEDLLSNQTLLNQALDDFGLKKYAGNEFFLMRVLESDTTDPASFV
NRLSDSKLADFANAFQFNQPPEYTSSMEALVGEFNAMNDGNGPANADELLENEDLLKAVV
DSFDLEYTNTIFLKRMLESNPYDPDSPVNQQEDPRYLAMSRAFGFGISDINSFTSPEELL
AQPQLLEDALEQFNLSNPGEQYIRDVLESDLSDPNSFVNQPSNLAFYDFAEAFQNEWPSA
PSRMQVLADEVGGKLAGYEQPQQFVFDFDAFEAGLDVFNISERELDFDVMIKAFESDLSS
EISYANLHRDPNLKAMAHAFAFNPGGSDHTYPAGFAQEIADLYKDRNFEIAIGESDPNMR
LALSLERELQSIADAGGSEDAHWFGIIGSPPLKSMFETALGLPASFGQLDVDRQVNEMKE
RAQTSFGTTHPADLLEPETLDAFRNRFLLLSGLNSDQAANGFSDPIFTLFQ