Protein Info for Psest_0233 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 58 (22 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 184 to 201 (18 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 282 to 307 (26 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details PF13687: DUF4153" amino acids 67 to 391 (325 residues), 27.5 bits, see alignment E=8.9e-11

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_4013)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHQ3 at UniProt or InterPro

Protein Sequence (577 amino acids)

>Psest_0233 hypothetical protein (Pseudomonas stutzeri RCH2)
MEQTGEARPLKIYLAVGVLQGLVLWAASEAWPHSTGWRVLCSALLAFTVIGGWQVQLLWG
GLREAGRWRLVLAAAVLPAVLAGGLALQFDQPRWYYLGESVGTLLLWSNLILAYVLTPFI
QARDADHRWRVDYAALYRHAINNGLLLFMALLMLAAFWLLIWLWAGLFKLVGIRIFATLF
ESSGFIWIASATVVAIGLWIGLERGQVVDALRNVLQAMCRFLLPLTVLILLIFVVCLPFT
GLQPLWETRHATPILLAMVFAHVALLNGVVQDGRQAVHYPRALRVLVDASSLCLPLLAAL
AVYALWLRIDQYGLTPDRVVAVGATLVALLHALALMAAVLQRRDGWLAGLRRSNPLLALI
SVALLLLMHLPPLSPLQLSAANQYQRLLDERVPTERTDLGALRFQLGQPGRDHLEKLRQR
LAEPGLADAHREQLQADLQRLDKADSYWNWRHEHDMANTAPVPWIGEPLEEAGGELSQAI
ATQGCDGDCTLFAVDLDDDSQPEVLLLRGARPRVVTVLGRGDTGGWRWIGHLRTTDQQTL
DGETLRQQIERGALQVVAPRFKALEIDGIRLEPAITE