Protein Info for Psest_0232 in Pseudomonas stutzeri RCH2

Annotation: Predicted dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01266: DAO
  • amino acids 5 to 362 (358 residues), 211.7 bits, E=3.6e-66
• PF13450: NAD_binding_8
  • amino acids 8 to 47 (40 residues), 27.7 bits, 3.9e-10

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_4014)

Predicted SEED Role

"Aminobutyraldehyde dehydrogenase (EC 1.2.1.19)" (EC 1.2.1.19)

MetaCyc Pathways

• L-lysine degradation X (5/6 steps found)
• putrescine degradation V (2/2 steps found)
• superpathway of ornithine degradation (6/8 steps found)
• putrescine degradation IV (2/3 steps found)
• putrescine degradation I (1/2 steps found)
• L-lysine degradation I (4/7 steps found)
• superpathway of L-arginine and L-ornithine degradation (8/13 steps found)
• superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (6/11 steps found)
• superpathway of L-lysine degradation (11/43 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Urea cycle and metabolism of amino groups
• beta-Alanine metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.1.19

Sequence Analysis Tools

See L0GDL6 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Psest_0232 Predicted dehydrogenase (Pseudomonas stutzeri RCH2)
MDRVDCVVVGAGVVGLAVACALALAGREVLVLEAEAAFGTATSARNSEVIHAGIYYPQGS
LKGRLCVAGRRQLYDFCDSHGVAYRRCGKLIVATDEAQIAALEQLQRHAQANGVDDLQRL
DGHEVLALEPQLHAVAGLLSPSTGIIDSHALMLALLGDAERHGAVLALNAPVADIVAASD
GLRVEVGGADPLQLLARTVVNCAGHGAPVLAARTQGLSDAARPRQFFAKGSYFSLSGCTP
FRHLVYPLPEPGGLGVHLTLDLAGQARFGPDVQWVDDLDYRIEPARAEGFYAAIRRYWPG
LPDDALQPAYTGIRPKISGPGEAAADFRIDGPAQHGIAGLVNLFGIESPGLTACLAIAEH
VCGLLEHKALAT