Protein Info for Psest_2338 in Pseudomonas stutzeri RCH2

Annotation: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 30 to 45 (16 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 306 to 331 (26 residues), see Phobius details amino acids 351 to 377 (27 residues), see Phobius details amino acids 397 to 415 (19 residues), see Phobius details amino acids 421 to 443 (23 residues), see Phobius details amino acids 465 to 492 (28 residues), see Phobius details amino acids 711 to 731 (21 residues), see Phobius details amino acids 763 to 787 (25 residues), see Phobius details amino acids 798 to 818 (21 residues), see Phobius details PF02687: FtsX" amino acids 264 to 370 (107 residues), 32.2 bits, see alignment E=4.8e-12 amino acids 715 to 827 (113 residues), 27.1 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 92% identity to psa:PST_2018)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNG3 at UniProt or InterPro

Protein Sequence (834 amino acids)

>Psest_2338 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component (Pseudomonas stutzeri RCH2)
MMRMPKARLLALAYRQLLRDARAGELRVLFFALVVAVAASTAIGYFGARLNDAMLLRASE
FLGADMVLSGSAPASPEQIEAGKQLDLDHAQVVEFSSVIATEQDLQLASVKAASSSYPLR
GTLRSAAQPYEAEQPGQGPAPGEAWAEARLFAALELQIGDSIEVGSKLLRLTRVLTYEPD
RVGDFYSLTPRVLMHLDDLEATGVVQPGSRVRYRELWRGETATLAAYQQSIQAGLQAHQR
IETANDSNRQIGGALGRAERYLNLASLAAILLAGVAVALSAARFATRRFDASALLRCLGL
SRNDALLLYTLQLAMLGVLASLAGALLGWAAQHGLFFLLRDLLAQEIPPGGVWPAAAGIA
TGLVALAGFALPPLAALGRVPPLRVLRRDMLPVPPSAWLVYGTAIFALGLIMWRLSLDLK
ITLALLGGGLLATLLLGGLLLLGLKGMRRLLAGASLSWRLGLGQLLRHPLAAAGQALAFG
LILLAMALIALLRGELLDTWQDQLPDNAPNHFVLNVLPAEKDAFAERIAALSNHAASLYP
VVPGRLISINDEPVRQLVSKESQGERAIRRDLSLTWAADLPKDNHLVAGQWWTERKATDL
PGVSVEAELAESLQLKLGDRLSFTIGGLTREASVTSLREVNWDSFQPNFYMIFEPDTLEG
MPATYMTSFHLPPGKERELVELARAFPSVTLLQVEALLAQLRSILAQVSLAVEYVLLFVL
AAGLAVLFAGLQATLDERIRQGALLRALGAERRLLLRARRAEFGLLGAASGLLAALGCEL
VSALLYHYAFDLRWQPHPWLLVLPLIGALLVGGAGLIGTRRALNASPLTVLRES