Protein Info for PGA1_c23240 in Phaeobacter inhibens DSM 17395

Annotation: protein hipA-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF07804: HipA_C" amino acids 41 to 181 (141 residues), 96.2 bits, see alignment E=1.2e-31

Best Hits

Predicted SEED Role

"HipA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ENZ5 at UniProt or InterPro

Protein Sequence (348 amino acids)

>PGA1_c23240 protein hipA-like protein (Phaeobacter inhibens DSM 17395)
MDAAGAPRLGLSEKGDPLATPMSGPPSTTIIKPDNPNLPGIVDVRNRTVLAVARYDRTTR
RDGSLRRLHQEDFAQANDIFPSQKYEQGTVAGLNLNQLLTTAQHLPAQDAPTLQDQVIFN
ILVANTDAHAKDYSMLLSGRPRLAPLYDISTVLHCDHVNQYHAQKLGGRKRKPADMARLY
WTKLVTGKDVETTPLPPLRKGQLASFDIIPVPPRTRQSPKDETARFMAKKAIAEFTELND
FKRLHSAVKAWVKQHRDEQSKRCQERPPVWEECQRLQQFKRLSSGLTGLCATRRLFYDRT
RKQITSSKLSRLPRGNRTSPADLPLALDTALPATRLACEPAPLRGQEC