Protein Info for PGA1_c23200 in Phaeobacter inhibens DSM 17395

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF01548: DEDD_Tnp_IS110" amino acids 6 to 146 (141 residues), 61.4 bits, see alignment E=9.1e-21 PF02371: Transposase_20" amino acids 212 to 288 (77 residues), 94.8 bits, see alignment E=3.4e-31

Best Hits

KEGG orthology group: K07486, transposase (inferred from 74% identity to jan:Jann_3216)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E2M3 at UniProt or InterPro

Protein Sequence (339 amino acids)

>PGA1_c23200 transposase (Phaeobacter inhibens DSM 17395)
MTVKTVGLDLAKDVFQVHGISENGRVIFNRAIKRAKLLRFFETLPPCTVGMEACGSSHHW
GRQLRKLGHDVKLMPAGYVKPYVKRGKNDAVDAEAICEAVRRPTMRFVEIKTEEQQAILS
IHRTRDLAVRQRTQMANMIRSLLREFGHILPIGIEAVTAFAKRHLSGDHPDMPEIATGML
GIQCYQFIGLNERIDGYSKMIEQHAMLSADARRLMRMPGIGPITASAIVATIGDAHQFRT
GRDLAAWLGLTPLNKSSGGKERLGKITKQGDRYIRKLLVVGMTSRAVMAKRSPEKVDLWT
AKIIADKPFRLATTAMANKAARAIWAMLTKKQEYRQPAF