Protein Info for HP15_2217 in Marinobacter adhaerens HP15

Annotation: protein containing DUF177

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 PF02620: YceD" amino acids 66 to 180 (115 residues), 59.1 bits, see alignment E=2.3e-20

Best Hits

KEGG orthology group: K07040, uncharacterized protein (inferred from 70% identity to maq:Maqu_1871)

Predicted SEED Role

"COG1399 protein, clustered with ribosomal protein L32p"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PFR1 at UniProt or InterPro

Protein Sequence (184 amino acids)

>HP15_2217 protein containing DUF177 (Marinobacter adhaerens HP15)
MSNASNAELPKSVDPYRLAEHNSTLEGVIPISGLGRFRESVLGFSEGAACRVKLSFFMDG
ERRRVVSGELAAPVDLECQRCMGAMSVTLVSEFKLGLVTSDEQAQQLPKELEPFLTDDFT
ADLWSMVEDELLLVLPPFPLHERDQCPAREDLEAYEPDSSGAEPVRKSGENPFSVLADLK
KTKH