Protein Info for Psest_2252 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 transmembrane" amino acids 36 to 53 (18 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 144 to 168 (25 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 333 to 350 (18 residues), see Phobius details amino acids 362 to 387 (26 residues), see Phobius details amino acids 407 to 427 (21 residues), see Phobius details amino acids 437 to 455 (19 residues), see Phobius details PF03773: ArsP_1" amino acids 69 to 455 (387 residues), 225.4 bits, see alignment E=4.7e-71

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 87% identity to psa:PST_2093)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ56 at UniProt or InterPro

Protein Sequence (458 amino acids)

>Psest_2252 Predicted permeases (Pseudomonas stutzeri RCH2)
MDGPAQEQPASTSDTPLSLRAHLANFWRGHPTEAKVLLGMCAAFLLIFFLPMGQPRFENA
VLEGLRLTQWYAREHVILCLLPAFVIAGAMAVYISQGAVMKHLGPASPKPVAFGVASIAG
TLLAVCSCTVLPLFGGIYRRGAGLGAAIAFLYSGPAINVMAIVVTAKVLGAELGIARAVG
AIVFALVIGAIMHLLYRREEAARAAKSARGFAGDDDGHPLGDIVALFSLMIGILVFANWA
SAENSAWMAVHAWKWPITATLAILLASLLVRRWNWSVRPLLMIGALVAASALLAPQWPEL
AMVIGIAGLMLQASRQNAASQEWVGQSWDFTKQIMPLLLGGVLIAGMLLGRPGHEGLIPS
EWVVWAVGDNSFTSTLLASVLGAFMYFSTLTEVPIVEGLLGAGMGKGPALAILLAGPALS
LPNMLVIRTVLGTQKTIVYCSLVVVMATLSGYLYGQLM