Protein Info for Psest_0220 in Pseudomonas stutzeri RCH2

Annotation: ABC-type uncharacterized transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 758 transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 497 to 520 (24 residues), see Phobius details amino acids 526 to 545 (20 residues), see Phobius details amino acids 558 to 577 (20 residues), see Phobius details amino acids 609 to 628 (20 residues), see Phobius details amino acids 657 to 677 (21 residues), see Phobius details amino acids 723 to 744 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 475 to 752 (278 residues), 33.4 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 94% identity to psa:PST_4026)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GFN3 at UniProt or InterPro

Protein Sequence (758 amino acids)

>Psest_0220 ABC-type uncharacterized transport system, permease component (Pseudomonas stutzeri RCH2)
MNDIETMSANSDVQRLDFNTPALQRKRRIRALKDHLARWYVSIGGLAVLGAITLIFFYLA
QVVLPMFQGAELESRAVQQPAWLAEAGEPLLLTIEEQNQVAMRLGNDGQVRFFGLRDGAL
LSSKALPLPEGSRIVSVGQDTPGTRRLVLGLDNGQALVVEHNYKLTYPNNQKTITPELAY
PFGEEPLQLDPEGRAIDRAAISMNGKTLLVAGATGTTLHAQRIASSENLLTGEVTLEQER
LDLPQLAEPIRQLLIDPRHMWLYAISGKASADVFDLRRKQLNGRYKLVGDGSEITSVSPL
LGGISLMVGDSRGTIGQWFMVRAADGQAELKNVRNFKLGSSAIRQILPEERRKGFLALDD
SGSLGVFHSTAHRTLVKEQVAEGAALTAMSPRATRLLVESKQGLKRFVIDNPHPEISWSA
LWGKVWYESYPEPDYVWQSTSANSDFEPKLSLAPLAFGTLKAAFYAMLLAAPLAICAAFY
TAYFMAPRLRSKVKPVIELMEALPTVILGFFAGLFLAPFLENHLPGIFALLLLMPVGILF
AAWSWSRLPQSVRLAVPDGWEAVLLIPVILLIGYGSLEISGHLENWFFGGDMRLWLSNDM
GIPFDQRNALVIGLAMGFAVIPTIYSIAEDAVFSVPRSLTLGSLALGATPWQTLTRVVLL
TASPGIFSALMIGMGRAVGETMIVLMATGNTPIMEANIFEGMRTLAANVAVEMPESEVGG
THYRVLFLAAMVLLMFTFVMNTLAELIRQRLRGKYASL