Protein Info for PGA1_c21710 in Phaeobacter inhibens DSM 17395

Annotation: Predicted integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF06282: DUF1036" amino acids 33 to 132 (100 residues), 91.9 bits, see alignment E=2.2e-30

Best Hits

Predicted SEED Role

"FIG01031704: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EYA6 at UniProt or InterPro

Protein Sequence (364 amino acids)

>PGA1_c21710 Predicted integral membrane protein (Phaeobacter inhibens DSM 17395)
MRARLILAFLLAPLGLALPAQGEAAGPDGPSYAGLEICNDTAVPQSVSLAYRDDGRWMSH
GWWALPPETCERVLDDPLKNRFYYFRSEAENWQFLDERISFCTAPGEFTIYGDRDCAIRG
YDSAFFAKIDTDVPAPPSNSGQPVVAYVARLSHHSRPKTGGAGPLSTVLSGAGATADSAF
DQDVTFQGCEERGDGRVICKLVMGAGQLCVTNDGMTDPAIIDRLQALDPGTPLRVSGKSL
TSGDRVTFASLNALTKREETRHDLMLDDLAGQWVSQADAYDLFVIEGAARRNFYGSVETM
TELLSVQTACDDATGAGPYLVAQAEDGGPTHCYRIISLTENELVLSYMPRGTELRYQRHD
LPLN