Protein Info for Psest_0213 in Pseudomonas stutzeri RCH2

Annotation: exodeoxyribonuclease V, beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1182 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 3 to 1178 (1176 residues), 869.7 bits, see alignment E=2.2e-265 PF00580: UvrD-helicase" amino acids 10 to 428 (419 residues), 179.2 bits, see alignment E=3.6e-56 PF13361: UvrD_C" amino acids 719 to 811 (93 residues), 48.4 bits, see alignment E=2.4e-16 PF12705: PDDEXK_1" amino acids 957 to 1157 (201 residues), 28 bits, see alignment E=5.1e-10

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 94% identity to psa:PST_4033)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHN1 at UniProt or InterPro

Protein Sequence (1182 amino acids)

>Psest_0213 exodeoxyribonuclease V, beta subunit (Pseudomonas stutzeri RCH2)
MKLDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELR
ERIRARLADLLAVYDGTPSTDDFLNRLHARYPDEPSRRRLLLAVHGFDEAAIFTIHGFCQ
RALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKSRITPVWLR
QRLRSHLGKPYLRVEPQGAPVAADLRPVEAAWQRAADLWKRAGSAWVAELLAHGGLSQST
HKSIKFASWQMDLDAYFADPAVMFDLPEGAAKFGVRALTKACKKGHDAPVCELAHALDEL
ADQVAEALPAGKQRLIALQVALLERLNRELPERKAAQRLLAFDDLLNRLDQALQGPVGED
LAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGSEASLCFVGDPKQAIYAFRGADLAT
YMTAKQQADREPFNLPTNYRSTPELIAALNQLFDHPQPFAQPDLRYPPVGAADKPRAGLR
LLEEGEAAPLSLVWLGDDPLGKGEAAQLAASDTARRIALQLAGAAEGRAGFDKDGVFTPL
KGGDIAVLVANHRQAGMIADELAARGVPSVRRGRDSVWRSEEAGELAAVLAAYAEPGREG
LLRYALATRLLGRSAADLARCQDDQQQWDAEREAAERYHQLWQQQGFMRVFRAWLDEQAV
AERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQRGSEGAGEEALLRLES
DAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNRDSARCHDAQGQPLLDLGSGELEDN
LERARQEVFAEQLRLAYVALTRARDRLWLHWGPVNLCKPKKDGSLADEGLHSSALAWLLH
GRELPGEQPLSELGNYLADFNGGSLRLAIERLVQGSDGRMACLPLESREASAQGPGRAVP
PQQLSQLNRNLHSAWRIGSFSGLAAGMHMEAPDRDALAIPDAGEPGSGFFAFPRGARAGT
CLHAVLEDWARGKGELEALVEPALQAYGLPLEWQEIATAHLQKVLETDMDGGGLTLAALQ
SARRLPELGFTFPVRDLDVARLRALLVDPANGLAEPLREAAARLEFDSLKGFLKGFIDLT
FEHDGRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLADF
HDEQLGGAFYLFLRGMPEAGVYFARPDDALLDALDRLFEEGR