Protein Info for Psest_0212 in Pseudomonas stutzeri RCH2

Annotation: exodeoxyribonuclease V, gamma subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1099 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 2 to 1049 (1048 residues), 952.1 bits, see alignment E=2.2e-290 PF04257: Exonuc_V_gamma" amino acids 2 to 317 (316 residues), 344.1 bits, see alignment E=7.6e-107 PF17946: RecC_C" amino acids 804 to 1024 (221 residues), 155.3 bits, see alignment E=2e-49

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GDJ6 at UniProt or InterPro

Protein Sequence (1099 amino acids)

>Psest_0212 exodeoxyribonuclease V, gamma subunit (Pseudomonas stutzeri RCH2)
MLSLYHAPDLETLGELATRLLAQPLADPFAPALVVVPSQGMGRWLTLELARKQGIAMQLE
IQLPAKFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYLDGGDER
RRLSLAAKIADVFDQYLLYRDDWLAAWERGETFDLGPDEAWQALLWRELTKDGHPHRARL
LGDLLQRLYSDEPLPGLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCALNPSREAWGE
IRDIRELARQPESGADDWYLDVGHPLLASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDE
DLRDDSLLHALQNDILRLRTRQPDERIVLAENDRSLEVHIAHSPLREVEILHDQLLARFA
TNPALTPDQVVVLTPDIERYAPFIEAVFAPREGSPRIPYSLADRSLRAEMPLIEAFLELL
MLAQSRFTAEEVLAWLEQPAIARRAGIESEDLPLLRDWLRDAGVRWGRDGSQRARLGLPD
ESAFTWRQGLDRLLLGFAAPPQLAGDHAPLLGEHWPLDALEGARGQLLGRLVEFVERLGV
LADQLARPRPLAEWADDLQILIDTLFDEREAGDTLLLLSLACAALRDQAQAADLTRPIEL
ELVHQQLSAALQQGGGASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGF
DLIGRHPRRGDRARRLDDRYLLLETLLSAREALYLSYVGRDPRDNAVLPPSVLLSEVLEA
VDMTAELPVAQASEHTGESVPKTASQKILVAHPLQPFSPRNFGDGLCTGFSSPWFRAAGR
LAEPPQTQPQPFASLLAEPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLAS
DEPFDLEMPAWNGLRRLSLQAMEHGWSDDDERRMACAAGWLPTGELGQALWGKLRGPVRA
FAPRLFELRPDDVPEPLPVDITLAGVRVHGWLDGVTPAGLFGWKLGRLGEWDLPPFWLRH
LLLNLSATPGIERHSLMLSPAGDWQLGPLANAAGLLEPWLEAYRCAIREPLPLLPRSSHA
FAKGYRKPARGSEPLDCGRKRAREAWLGAEFSPIAAEGEDPWNMLAFRDRDPLDQRFETL
AQELIGPALDALAEDEEEA