Protein Info for Psest_2133 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1222 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF04357: TamB" amino acids 895 to 1222 (328 residues), 189.8 bits, see alignment E=4.7e-60

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 87% identity to psa:PST_2183)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLL1 at UniProt or InterPro

Protein Sequence (1222 amino acids)

>Psest_2133 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MRGLGWTLLGLVLLLAIALGTLLGTSAGSRWLLTQVPGLTVEAFEGRLGQRWQADRLIWE
QDGSRVEVQQPRLAWSPACLLKRTLCIDELVTGSIELNFPPSEPDPNAEPFSLPDINLPL
ALQVERIEIGQVTLNDAEQLRRLQLQANWRADGLDIQRLDVRRDDLDLTLTGRLQPSGNW
PLQLQGQAALQSPDEQPWALMIAIEGDLREQLQLQVESQGYLQGSLSGHVRALDEQLPAT
VRLNADGFKALPDLPETLRLDDLELTASGNMQDGYRLLGTTQLPGEGGAVRVALEGVVST
TGAQIATLELDAGQQRHVRLSGDVDWQDGLAANADLLWRDFPWRRFYPEIEEPPVTLREL
KAQIQYQDGNYLGNFESAMTGPAGDFTLNSPVSGNLEAVHLPQLELRAGQGSATGSVSVG
FADGIDWKADLALSDLDPAYWLAELPGNLGGTLQSQGALRDERLQAEASLDINGRLRGQN
TSLQLQASGEGERWNLPVIDLRMGDNRVHGEGTWAQTLDGRVQLELRRLAQLWPDLRGQL
SGEVTLGGTAAAPSGKIELSGRNLAYQDNRLRRLNLQGQLSDGERGRLVLNAESIRAGET
DLGALQVNADGSADKHQADLRLQGPLLDLALAVDGGLSGEDWLGRLTRGELSAEQQNWAL
QRPATLQRFADGRLELGAHCWLSGPASLCAVDQRIMPDPRIRYRLRDFALQSLAEYLPED
FRWQGELNADIELDLPASGPNGRVQVDAGPGVLRIRDADEWHDFPYQTLVLNSRLLPERI
DSELRFQGGELGELDVQVRIDPRPENKPIYGEFRLSGLDLAVARPFVPMVERLRGQLNGS
GQLSGSLRQPTLNGQLLLSGGEIAGSELPTTFEDLRVRMLIEGERLSIDGDWRAGDQGRG
NLSGTLDWRDAVDLDLAIKGSRLPVVVEPYADLEVEPDLRIVLSGQDLAVSGRVAVPRGA
ITVRELPPTTVRVSEDTVIVGREAEEPATPLAVKMDIDVEVGQDRLRFTGFGLTADLAGY
LHIGDNLDARGELQLKNGRYRAYGQRLTIRRAELLFTGLISQPFLNIEAIRRIEAENVVA
GLRITGSAEQPRIDVFSEPAMSQEQALAYLVLGRPLGADTGDSNLLAQAALGLGLAGSSS
ITGGLAQRLGIQDFQLDTEGTGAGTSVVATGRLTERLALRYGVGVFEPTNTIALRYQLTR
RIFLEAASGLASSLDVFYRRDF