Protein Info for HP15_2029 in Marinobacter adhaerens HP15

Annotation: permease perM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 19 to 53 (35 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 307 to 332 (26 residues), see Phobius details PF01594: AI-2E_transport" amino acids 19 to 345 (327 residues), 228.3 bits, see alignment E=7.1e-72

Best Hits

KEGG orthology group: K03548, putative permease (inferred from 90% identity to maq:Maqu_1693)

Predicted SEED Role

"Putative permease PerM (= YfgO)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQS3 at UniProt or InterPro

Protein Sequence (359 amino acids)

>HP15_2029 permease perM (Marinobacter adhaerens HP15)
MIRTLRGLAHKYFSDEEAVILFLILVTGTIFVIWFGAMLAPAIASLIVAFILQGLVTKLN
KLGVPETVSIIGVFLVFLGVLVGFLFGLLPLIWTQLSNLAGEAPRIIRELQSYLELLPQQ
YPHLISGEAVSTVYSQVSTEVGHMTQWLVSFSLSSIPDLVALLIYMVLVPILVFFFLKDR
EVLLNSIARLLPPQRPMMLQIWHEVNLQCANYVRGKAVEILIVGGATYIAFKLLGMPYAA
LLSLLVGLSVVIPYIGAAVVTIPVAVIALFAFGWGSQFIWVMVIYGVIQALDGNVLVPIL
FSEVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVFAAWPVKESAPPAEPGSA