Protein Info for Psest_2103 in Pseudomonas stutzeri RCH2

Annotation: Fatty acid cis/trans isomerase (CTI).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 758 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06934: CTI" amino acids 77 to 757 (681 residues), 943.9 bits, see alignment E=3.3e-288

Best Hits

KEGG orthology group: None (inferred from 84% identity to psa:PST_2222)

Predicted SEED Role

"cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLI2 at UniProt or InterPro

Protein Sequence (758 amino acids)

>Psest_2103 Fatty acid cis/trans isomerase (CTI). (Pseudomonas stutzeri RCH2)
MSLRLWLGCLLLLIGSAVQAEAVSYQRDIQPIFTAKCVACHACYDSPCQLNLGSGEGASR
GGHKLPVYNGVRVKAQQPTRLFLDAEGEAAWRRKGFHSVLEAEGNQAALMARMLELGRSQ
PLVPNAKLPPGLDIGIGRENSCPLPGEFDGYARKNAHGGMPFAVTGLSDEEYTVVQRWLE
QGAPVEHRQLKPTPAEALQIEQWERLFNTPGARGNLVGRWLYEHLFIAHLHFEGGESGHF
YQLVRSRTPSGEPVDPIAARRPNNDPGTRFSYRLRPIPDVIVHKTHITYPLSAQKLARVT
ALFFEDDWPVDSIPGYGAAHRANPFKTFQAIPAQARYQFMLDNAEYFVRTFIRGPVCRGQ
IATDVIRDNFWVFFQDPQHDLYLTDRRYREQTTPLLAMPGQFDEMGNLLAFWKTYRVKRN
QYEHLRTQAYANKPADWAHIWSGNDNALLSIFRQHDSASVRKGLIGEIPQTLWWMDYPLL
ERTYYQLVVNFDVFGNVSHQGQTRLYFDLIRNGAELNFLRLLPASSRQGILNGWYEKGGQ
LKLLLAYTSIDATTPSLLDLGKADAKRAFARQLLARYAGINATPDPINRCQGSHCFRAGQ
PALLQRAEQALSRLTNRLGAGLPAIQYLPEATLLRVEAGDGRRELYSLLRNRAHSNVAFM
YGESLRWQPRLDTLTVYPGILSSYPNFLFNMPAADVPAFVSALEQVRDNRDFERLVERWG
VRRSHPRFWDYFTDLTRYLEETEPVEAGVLDMNRYENL