Protein Info for PGA1_c20810 in Phaeobacter inhibens DSM 17395

Annotation: MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details amino acids 334 to 351 (18 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 267 (241 residues), 68.1 bits, see alignment E=3.5e-23 amino acids 263 to 421 (159 residues), 48.6 bits, see alignment E=2.8e-17

Best Hits

KEGG orthology group: None (inferred from 75% identity to sit:TM1040_0869)

Predicted SEED Role

"FIG00918533: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DRV4 at UniProt or InterPro

Protein Sequence (430 amino acids)

>PGA1_c20810 MFS-type transporter (Phaeobacter inhibens DSM 17395)
MATEIEFSFKTLTGIAQRHIRVFQIHQFLDRFAMGLTVAVVALALTDRGMDLLQISLLFG
VYSLTTMAMELPFGGLADNIGRKPVFLAAVIASLISLVLFLSSSDFTVLALSFACIGFGR
ALRSGTLDAWFVETFRTAAPNVDVQPALAKAQGANAMGLAFGAILGGLLPDLFGMTALRY
GISIYDVSYVASFAVMIAVLIYTMFAITEEPRPLNASALRQGFTSVPSVIAQAGALALKH
PTLSMLLAALALVLMATNPVEVIWPTYAKPMLDERYANTAIGTLTAGYFFAIAFGAALSP
YISRVFRRRHAVTLAVLFSCLAGVQVALAMQGDIAGFIGVFLVYSVLLGASETPASSILH
RCVADRQRSTMLSLRSLIQQLGAALGLVLAGAVADIYSTPIAWSVGALFLLIAMVLSLVL
AKRLTRSPAS